- Replace direct array access with SymbolRepository for functions, classes, interfaces
- Introduce DiagnosticReporter interface with CLI and throwing implementations
- Add NativeBuilder for compile/link command management and parallel processing
- Create CommandOptions base class for compile and link options handling
- Implement project YAML loader with PHP version and OS family conditions
- Remove old array properties and update all related method calls
- Update compiler diagnostic methods to use new reporter pattern
- Refactor native compilation to use builder pattern with proper options
- Modify test utilities to work with new symbol repository structure
- Change src/Php/Translator.php to src/Translator.php in documentation
- Update class hierarchy diagram to remove Php subdirectory references
- Modify composer.json autoloader to map TypePhp namespace to src directory only
- Adjust all src/Php/* paths to src/* in configuration and test files
- Update project.yml sources to include ./src instead of individual Php subdirectories
- Remove Php subdirectory from file paths in platform and analysis tests
- Clean up directory references in test results documentation