fix(build): disable PEAR and refine symlink scanning

docs/en/LIBPHP_INSTALLER.md

@@ -21,7 +21,7 @@ When `libphp.so` is missing, the installer asks in sequence:
 3. the install directory, defaulting to `~/.typephp`;
 4. whether to install missing development packages via the detected `apt-get`, `dnf`, or `yum`.
 
-The installer reads the current `php-config --configure-options`, keeps the current PHP's extension configuration, replaces the install path, and adds `--enable-embed=shared`. PHP source is downloaded only from PHP.net, and verified using the SHA-256 from the official release information.
+The installer reads the current `php-config --configure-options`, keeps the current PHP's supported extension configuration, replaces the install path, and adds `--enable-embed=shared`. It always uses `--without-pear` because PEAR is deprecated. PHP source is downloaded only from PHP.net, and verified using the SHA-256 from the official release information.
 
 After compilation, the main files are as follows:
 

docs/zh-cn/LIBPHP_INSTALLER.md

@@ -21,7 +21,7 @@ vendor/bin/tpc.php project.yml
 3. 安装目录，默认为 `~/.typephp`；
 4. 是否通过检测到的 `apt-get`、`dnf` 或 `yum` 安装缺失的开发包。
 
-安装器读取当前 `php-config --configure-options`，保留当前 PHP 的扩展配置，替换安装路径并加入 `--enable-embed=shared`。PHP 源码只从 PHP.net 下载，并使用官方发布信息中的 SHA-256 校验。
+安装器读取当前 `php-config --configure-options`，保留当前 PHP 支持的扩展配置，替换安装路径并加入 `--enable-embed=shared`。由于 PEAR 已废弃，构建始终使用 `--without-pear`。PHP 源码只从 PHP.net 下载，并使用官方发布信息中的 SHA-256 校验。
 
 编译完成后主要文件如下：
 

phpunit/src/Build/FileScannerTest.php

@@ -68,12 +68,16 @@ final class FileScannerTest extends TestCase
      * Two links to one directory are one source file seen twice, and compiling
      * it twice would define its symbols twice.
      */
-    public function testAliasesOfOneFileAreScannedOnce(): void
+    public function testAliasesOfOneFileAreCompiledOnce(): void
     {
         symlink($this->root . '/outside', $this->root . '/project/link-a');
         symlink($this->root . '/outside', $this->root . '/project/link-b');
+        file_put_contents(
+            $this->root . '/project/project.yml',
+            "name: demo\nsources:\n  - .\n",
+        );
 
-        $files = (new FileScanner($this->root . '/project'))->scan();
+        $files = $this->scanProject($this->root . '/project/project.yml');
 
         $this->assertSame([
             $this->root . '/project/link-a/src/Linked.php',
@@ -102,6 +106,45 @@ final class FileScannerTest extends TestCase
         }
     }
 
+    /**
+     * YAML ignore rules run outside FileScanner, so real-path deduplication must
+     * wait until the project-level filter has selected the surviving alias.
+     */
+    public function testYamlIgnoreOfOneAliasKeepsTheOther(): void
+    {
+        symlink($this->root . '/outside', $this->root . '/project/link-a');
+        symlink($this->root . '/outside', $this->root . '/project/link-b');
+
+        foreach (['link-a' => 'link-b', 'link-b' => 'link-a'] as $excluded => $kept) {
+            file_put_contents(
+                $this->root . '/project/project.yml',
+                "name: demo\nsources:\n  - .\nignore:\n  - {$excluded}\n",
+            );
+
+            $this->assertSame([
+                $this->root . '/project/' . $kept . '/src/Linked.php',
+                $this->root . '/project/src/Own.php',
+            ], $this->scanProject($this->root . '/project/project.yml'));
+        }
+    }
+
+    public function testLexicalPathNormalizationPreservesNetworkRoot(): void
+    {
+        $compiler = CompilerTest::create($this->root . '/project');
+        $normalize = (new \ReflectionClass($compiler))->getMethod('normalizeLexicalPath');
+        $separator = DIRECTORY_SEPARATOR;
+        $path = $separator . $separator . implode(
+            $separator,
+            ['server', 'share', 'project', '.', 'vendor', '..', '..', '..', 'package'],
+        );
+
+        $this->assertSame(
+            $separator . $separator . 'server' . $separator . 'share'
+                . $separator . 'package',
+            $normalize->invoke($compiler, $path),
+        );
+    }
+
     /**
      * `ignore` names the path that reaches a directory, not the path it points
      * at, so the scanned path is what an entry has to be compared against.
@@ -145,9 +188,8 @@ final class FileScannerTest extends TestCase
         $reflection = new \ReflectionClass($compiler);
 
         $parse = $reflection->getMethod('parseProjectYaml');
-        $filter = $reflection->getMethod('filterIgnoredFiles');
 
-        return array_values($filter->invoke($compiler, $parse->invoke($compiler, $projectFile)));
+        return array_values($parse->invoke($compiler, $projectFile));
     }
 
     private function removeDirectory(string $directory): void

phpunit/src/Installer/PhpBuildConfigurationTest.php

@@ -121,6 +121,23 @@ final class PhpBuildConfigurationTest extends TestCase
         self::assertContains('--enable-pcntl', $options);
     }
 
+    public function testDeriveAlwaysDisablesDeprecatedPearInstallation(): void
+    {
+        $options = PhpBuildConfiguration::derive(
+            "'--with-pear=/usr/share/php' '--enable-mbstring'",
+            '/home/test/.typephp'
+        );
+
+        self::assertSame(
+            ['--without-pear'],
+            array_values(array_filter(
+                $options,
+                static fn(string $option): bool => str_contains($option, 'pear')
+            ))
+        );
+        self::assertContains('--enable-mbstring', $options);
+    }
+
     public function testParseShellWordsRejectsIncompleteInput(): void
     {
         $this->expectException(\InvalidArgumentException::class);

src/Build/FileScanner.php

@@ -104,7 +104,11 @@ class FileScanner
         // keep both generated code and cache classification deterministic.
         sort($files, SORT_STRING);
 
-        return $this->deduplicateByRealPath($files);
+        // Keep aliases until the project-level ignore rules have run. If two
+        // links reach the same file and only one is ignored, removing aliases
+        // here would also remove the allowed path. The source pipeline performs
+        // real-path deduplication after filtering.
+        return $files;
     }
 
     /**
@@ -166,34 +170,6 @@ class FileScanner
         }
     }
 
-    /**
-     * One file reachable through several links is still one source file, and
-     * compiling it twice would define its symbols twice.
-     *
-     * Exclusions have already run, so a path the project excluded can never be
-     * the alias that survives here. The list is sorted, so which alias survives
-     * does not depend on directory-entry order.
-     *
-     * @param list<string> $files
-     * @return list<string>
-     */
-    private function deduplicateByRealPath(array $files): array
-    {
-        $unique = [];
-        $seen   = [];
-
-        foreach ($files as $file) {
-            $identity = realpath($file) ?: $file;
-            if (isset($seen[$identity])) {
-                continue;
-            }
-            $seen[$identity] = true;
-            $unique[]        = $file;
-        }
-
-        return $unique;
-    }
-
     private function isExcluded(string $filePath): bool
     {
         $excluded = false;

src/Build/SourcePipelineTrait.php

@@ -947,15 +947,22 @@ PHP
 
     protected function filterIgnoredFiles(array $files): array
     {
-        if (empty($this->ignorePaths)) {
-            return $files;
-        }
-
         $filteredFiles = [];
+        $seenRealPaths = [];
         foreach ($files as $file) {
-            if (!$this->shouldIgnoreFile($file)) {
-                $filteredFiles[] = $file;
+            if ($this->shouldIgnoreFile($file)) {
+                continue;
             }
+
+            // Ignore rules describe the path used to reach a source. Resolve
+            // identity only after those rules have selected the surviving
+            // aliases, then compile each physical file once.
+            $identity = realpath($file) ?: $file;
+            if (isset($seenRealPaths[$identity])) {
+                continue;
+            }
+            $seenRealPaths[$identity] = true;
+            $filteredFiles[] = $file;
         }
 
         return $filteredFiles;

src/Installer/LibPhpInstaller.php

@@ -182,7 +182,10 @@ final class LibPhpInstaller
             $this->run(['tar', '-xJf', $archive, '-C', $workDir]);
         }
 
-        $this->console->write('Configuring PHP with the current installation options plus --enable-embed=shared');
+        $this->console->write(
+            'Configuring PHP with compatible current installation options, '
+            . '--enable-embed=shared, and --without-pear'
+        );
         $this->run([$sourceDir . '/configure', ...$options], $sourceDir);
         // PHP is a large build; capping parallelism avoids exhausting memory on
         // hosts that expose many CPUs (especially containers and CI runners).

src/Installer/PhpBuildConfiguration.php

@@ -118,6 +118,9 @@ final class PhpBuildConfiguration
         $replace = [
             '--prefix', '--with-config-file-path', '--with-config-file-scan-dir',
             '--enable-embed', '--enable-cli', '--disable-cli', '--with-libdir',
+            // PEAR is deprecated by PHP and PECL installation is being replaced
+            // by PIE. Do not inherit either form from the host PHP build.
+            '--with-pear', '--without-pear',
         ];
         $drop = [
             '--with-apxs', '--with-apxs2', '--enable-fpm', '--with-fpm-systemd',
@@ -143,6 +146,7 @@ final class PhpBuildConfiguration
             '--with-config-file-scan-dir=' . $prefix . '/lib/conf.d',
             '--enable-embed=shared',
             '--enable-cli',
+            '--without-pear',
             ...$result,
         ];
     }

src/Translator.php

@@ -88,7 +88,7 @@ class Translator extends Preprocessor
     use ResourceCompilationTrait;
     use ClassConstantValueTrait;
 
-    public const string VERSION = '0.9.0';
+    public const string VERSION = '0.9.1';
     public const string APP_NAME = 'TypePHP Compiler (AOT)';
 
     protected bool $hasExplicitOutput = false;
@@ -3916,20 +3916,31 @@ CODE;
             $path = str_replace('\\', '/', $path);
         }
 
+        // Preserve the double leading separator of Windows UNC paths. Keeping
+        // it on POSIX as well makes the normalization rule deterministic and
+        // retains the implementation-defined // network-root form.
+        $networkRoot = str_starts_with($path, '//');
         $absolute = str_starts_with($path, '/');
+        // The server and share names form the root of a UNC path. `..` cannot
+        // cross that boundary into another share on the same server.
+        $rootDepth = $networkRoot ? 2 : 0;
         $segments = [];
         foreach (explode('/', $path) as $segment) {
             if ($segment === '' || $segment === '.') {
                 continue;
             }
-            if ($segment === '..' && $segments !== [] && end($segments) !== '..') {
+            if ($segment === '..') {
+                if (count($segments) > $rootDepth && end($segments) !== '..') {
                     array_pop($segments);
+                } elseif (!$absolute) {
+                    $segments[] = $segment;
+                }
                 continue;
             }
             $segments[] = $segment;
         }
 
-        $normalized = ($absolute ? '/' : '') . implode('/', $segments);
+        $normalized = ($networkRoot ? '//' : ($absolute ? '/' : '')) . implode('/', $segments);
         if ($prefix !== '') {
             $normalized = $prefix . $normalized;
         }